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Morning diarrhea refers to a condition where you have a loose and watery stool, along with an urgent need to have a bowel movement immediately upon waking up in the morning. It is possible that your morning diarrhea is temporary, particularly if it is caused by an infection or pregnancy. You can treat morning diarrhea successfully with medication and if the problem is occurring due to dietary issues, then you should make the required changes to prevent future problems.